nohup  platanus assemble -o Larrrea -f ../unknown_NoIndex_L000_R1.fastq ../unknown_NoIndex_L000_R2.fastq -t 10 -m 150 &

-o 输出文件头的名字

-f 你的序列文件

-t 线程数

-m 最大内存数

platanus assemble/scaffold/gap_close

Platanus version: 1.2.1

Usage platanus assemble [Options]
Options:
-o STR : prefix of output files (default out, length <= 200)
-f FILE1 [FILE2 ...] : reads file (fasta or fastq, number <= 100)
-k INT : initial k-mer size (default 32)
-s INT : step size of k-mer extension (>= 1, default 10)
-n INT : initial k-mer coverage cutoff (default 0, 0 means auto)
-c INT : minimun k-mer coverage (default 2)
-a FLOAT : k-mer extension safety level (default 10.0)
-u FLOAT : maximum difference for bubble crush (identity, default 0.1)
-d FLOAT : maximum difference for branch cutting (coverage ratio, default 0.5)
-t INT : number of threads (<= 100, default 1)

-m INT : memory limit for making kmer distribution (GB, >=1, default 16)

Outputs:
PREFIX_contig.fa
PREFIX_contigBubble.fa
PREFIX_kmerFrq.tsv

freemao

FAFU