GitHub原文
首先必须在Linux环境下
安装Anaconda(Ubuntu)
在Ubuntu终端中安装GetOrganelle
conda install -c bioconda getorganelle
下载好数据 (.gz)
wget https://github.com/Kinggerm/GetOrganelleGallery/raw/master/Test/reads/Arabidopsis_simulated.1.fq.gz
wget https://github.com/Kinggerm/GetOrganelleGallery/raw/master/Test/reads/Arabidopsis_simulated.2.fq.gz
装配
get_organelle_from_reads.py -1 Arabidopsis_simulated.1.fq.gz -2 Arabidopsis_simulated.2.fq.gz -t 1 -o Arabidopsis_simulated.plastome -F embplant_pt -R 10
上述代码随机应变
终端与数据要放在同一个文件夹
装配完后用网页进行fasta的组装