我想加载并调用一个使用MPI的库.
我想象每个等级加载自己的库版本,然后库将相互通信.我不想从库调用者进行任何通信或MPI处理.
无论我是否加载使用mpi的库或使用openmp的库,python代码都将保持不变.当我从C动态加载和调用库时,我设法使它工作.但是使用python它失败了:
mca: base: component_find: unable to open
/usr/lib/openmpi/lib/openmpi/mca_paffinity_hwloc: perhaps a missing
symbol, or compiled for a different version of Open MPI? (ignored)
[..]
It looks like opal_init failed for some reason;
[..]
opal_shmem_base_select failed –> Returned value
-1 instead of OPAL_SUCCESS
ompi_mpi_init: orte_init failed –> Returned “Error” (-1) instead of “Success” (0)
[..]
我想知道我要为python做些什么.像openmpi重新编译python的东西?
我举一个例子如下:
testMPI.py
#!/usr/bin/env python
from ctypes import *
# Loading library
raw = cdll.LoadLibrary('./libtest.so.1.0')
print "hello world "
raw.test()
test.f90
subroutine test() bind(c,name='test')
use MPI
implicit none
integer :: nprocs =-1 !< total number of process
integer :: rank=0 !< rank in comm world
integer :: ierr =-1 !<
call MPI_init(ierr)
call MPI_comm_size(MPI_comm_world, nprocs, ierr)
call MPI_comm_rank(MPI_comm_world, rank, ierr)
write(*,*)"hello world from ",rank," of ",nprocs
call MPI_finalize(ierr)
end subroutine
Makefile文件
FC=mpif90.openmpi
FFLAGS=-free -fPIC -g -Wall
all: obj test
test:
mpirun.openmpi -n 4 ./testMPI.py
obj:
$(FC) $(FFLAGS) -c test.f90
$(FC) $(FFLAGS) -shared -Wl,-soname,libtest.so.1 -o libtest.so.1.0 test.o
clean:
rm *.o libtest*
解决方法:
我有类似的问题,有一个解决方法:
当您运行configure以编译openmpi时,请使用以下标志:
./configure –disable-dlopen
希望这对你有用!