本文基于ArcGIS Runtime SDK for .NET(100.9.0)，官方有2D的资料Spatial relationships，本文完成三维的立方体是否相交的判定，效果如图

实现思路

地图初始化

使用SceneView初始化地图
创建三个图层，原始建筑数据的基础图层，绘制立方体的绘制图层，和显示相交结果的结果图层（这里均使用了shp文件作为基础创建图层）
设置图层的Renderer属性，将Z属性作为高程显示出来

SimpleLineSymbol mySimpleLineSymbol = new SimpleLineSymbol(SimpleLineSymbolStyle.Solid, System.Drawing.Color.Black, 1);
SimpleFillSymbol mysimpleFillSymbol = new SimpleFillSymbol(SimpleFillSymbolStyle.Cross, System.Drawing.Color.DarkGray, mySimpleLineSymbol);
SimpleRenderer mySimpleRenderer = new SimpleRenderer(mysimpleFillSymbol);
RendererSceneProperties myRendererSceneProperties = mySimpleRenderer.SceneProperties;
myRendererSceneProperties.ExtrusionMode = ExtrusionMode.AbsoluteHeight;
myRendererSceneProperties.ExtrusionExpression = "[Z]";
graphicLayer.Renderer = mySimpleRenderer;

绘制立方体

通过交互获得点坐标

// Get the mouse position.
Point cursorSceenPoint = mouseEventArgs.GetPosition(MySceneView);
// Get the corresponding MapPoint.
MapPoint onMapLocation = MySceneView.ScreenToBaseSurface(cursorSceenPoint);

弹窗设置立方体的高程
注意，这里可以绘制多于六面的立方体，只是示例使用了六面立方体
根据点集合和高程数据，在绘制图层创建立方体

var feature = graphicLayer.FeatureTable.CreateFeature();
feature.Attributes.Remove("Z");
feature.Attributes.Add("Z", setHeight.height);
ListpointsWithZ = new List();
foreach (var p in points)
{
    pointsWithZ.Add(new MapPoint(p.X, p.Y, p.SpatialReference));
}
Esri.ArcGISRuntime.Geometry.Polygon polygon = new Esri.ArcGISRuntime.Geometry.Polygon(pointsWithZ, points[0].SpatialReference);
feature.Geometry = polygon;
await graphicLayer.FeatureTable.AddFeatureAsync(feature);

计算二者关系

根据点击位置，查询在指定范围内目标图层是否有数据，如果有，则选中

private async TaskSetSelectForGraphicLayer(GeoViewInputEventArgs e)
{
    var result = await MySceneView.IdentifyLayerAsync(graphicLayer, e.Position, 1, false);
    GeoElement geoElement = result.GeoElements.FirstOrDefault();
    if (geoElement != null)
    {
        QueryParameters queryParams = new QueryParameters
        {
            // Set the geometry to selection envelope for selection by geometry.
            Geometry = geoElement.Geometry
        };
        // Select the features based on query parameters defined above.
        await graphicLayer.SelectFeaturesAsync(queryParams, Esri.ArcGISRuntime.Mapping.SelectionMode.New);
    }
    return geoElement;
}

选择了基础图层和绘制图层的数据后，经过数据处理（创建有正确高程的Polygon对象），调用GeometryEngine中的Intersects和Intersections方法查询二者是否有相交，以及相交的结果

private async void CheckOBBCollision_Click(object sender, RoutedEventArgs e)
{
    if (selectGraphic == null || selectFeatureGeoElement == null)
    {
        MessageBox.Show("请选择一个shp数据和一个绘制数据!");
        return;
    }

    //创建shp几何体
    Esri.ArcGISRuntime.Geometry.Polygon selectFeatureGeometryRealCube = GetSelectFeatureGeometryRealCube(selectFeatureGeoElement);
    
    //创建绘画几何体
    Esri.ArcGISRuntime.Geometry.Polygon selectGraphicGeometryRealCube = GetSelectFeatureGeometryRealCube(selectGraphic);

    var b = GeometryEngine.Intersects(selectGraphicGeometryRealCube, selectFeatureGeometryRealCube);
    var g2 = GeometryEngine.Intersections(selectGraphicGeometryRealCube, selectFeatureGeometryRealCube);

    if (b)
    {
        foreach (var g in g2)
        {
            if(g is Esri.ArcGISRuntime.Geometry.Polygon)
            {
                var p = g as Esri.ArcGISRuntime.Geometry.Polygon;
                foreach(var part in p.Parts)
                {
                    var feature = intersectionLayer.FeatureTable.CreateFeature();
                    feature.Attributes.Remove("Z");
                    double z = double.MaxValue;
                    ListpointsWithZ = new List();
                    foreach (var point in part.Points)
                    {
                        //只能计算平面体（即同一平面Z相同的数据）
                        if (point.Z < z)
                        {
                            z = point.Z;
                        }
                        
                        pointsWithZ.Add(new MapPoint(point.X, point.Y, point.SpatialReference));
                    }
                    feature.Attributes.Add("Z", z);
                    Esri.ArcGISRuntime.Geometry.Polygon polygon = new Esri.ArcGISRuntime.Geometry.Polygon(pointsWithZ, pointsWithZ[0].SpatialReference);
                    feature.Geometry = polygon;
                    await intersectionLayer.FeatureTable.AddFeatureAsync(feature);

                    graphicLayer.ClearSelection();
                    featureLayer.ClearSelection();
                }
            }
        }

        MessageBox.Show("二者相交");
    }
    else
    {
        MessageBox.Show("二者不相交");
    }
}

private Esri.ArcGISRuntime.Geometry.Polygon GetSelectFeatureGeometryRealCube(GeoElement geoElement)
{
    Esri.ArcGISRuntime.Geometry.Polygon selectFeatureGeometryRealCube = null;
    var feature = geoElement as Feature;
    var selectFeatureGeometryPolygon = geoElement.Geometry as Esri.ArcGISRuntime.Geometry.Polygon;
    if (selectFeatureGeometryPolygon.Parts.Count > 0)
    {
        Listpoints = new List();
        var part = selectFeatureGeometryPolygon.Parts[0];
        foreach (var point in part.Points)
        {
            //从属性中获得z
            object z = 0;
            feature.Attributes.TryGetValue("Z", out z);
            points.Add(new MapPoint(point.X, point.Y, (double)z, selectFeatureGeometryPolygon.SpatialReference));
        }
        selectFeatureGeometryRealCube = new Esri.ArcGISRuntime.Geometry.Polygon(points, selectFeatureGeometryPolygon.SpatialReference);
    }

    return selectFeatureGeometryRealCube;
}

示例代码

CubeCollision.xaml
CubeCollision.xaml.cs

注意事项

本文只完成了同一立方体高程相同的情况的讨论