分子表面计算库MSMS的linux安装教程

科研任务需要安装一个分子表面计算库MSMS(http://mgltools.scripps.edu/packages/MSMS/),但百度好久只有一个不完整的教程:http://blog.sciencenet.cn/blog-950202-1088180.html

无奈柯学上网后,谷歌到的第一条就解决了(对我就是在diss某度),链接如下:https://ssbio.readthedocs.io/en/latest/instructions/msms.html

Note!These instructions were created on an Ubuntu 17.04 system.

  1. Head to the Download page, and under the header “MSMS 2.6.X - Current Release” download the “Unix/Linux i86_64” version - if this doesn’t work though you’ll want to try the “Unix/Linux i86” version later.

  2. Download it, unarchive it to your library path:

    sudo mkdir /usr/local/lib/msms
    cd /usr/local/lib/msms
    tar zxvf /path/to/your/downloaded/file/msms_i86_64Linux2_2.6.1.tar.gz
    
  3. Symlink the binaries (or alternatively, add the two locations to your PATH):

    sudo ln -s /usr/local/lib/msms/msms.x86_64Linux2.2.6.1 /usr/local/bin/msms
    sudo ln -s /usr/local/lib/msms/pdb_to_xyzr* /usr/local/bin
    
  4. Fix a bug in the pdb_to_xyzr file (see: http://mailman.open-bio.org/pipermail/biopython/2015-November/015787.html):

    sudo vi /usr/local/lib/msms/pdb_to_xyzr
    

    at line 34, change:

    numfile = "./atmtypenumbers"
    

    to:

    numfile = "/usr/local/lib/msms/atmtypenumbers"
    
  5. Repeat step 4 for the file /usr/local/lib/msms/pdb_to_xyzrn

  6. Now try running msms in the terminal, it should say:

    $ msms
    MSMS 2.6.1 started on structure
    Copyright M.F. Sanner (1994)
    Compilation flags -O2 -DVERBOSE -DTIMING
    MSMS: No input stream specified

分子表面计算库MSMS的linux安装教程

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